Index

_

__init__() (fermilink.agent_runtime.AgentRuntimePolicy method) (fermilink.agents.AgentRegistry method) (fermilink.agents.registry.AgentRegistry method) (fermilink.cli.commands.gateway.GatewayLoopConfig method) (fermilink.cli.commands.gateway.QueuedRunJob method) (fermilink.cli.commands.gateway.TelegramInboundFile method) (fermilink.drvloop.instructions.DrvloopInstructionFiles method) (fermilink.drvloop.main.DrvloopConfig method) (fermilink.exploop.instructions.ExploopInstructionFiles method) (fermilink.exploop.main.ExploopConfig method) (fermilink.packages.curated_channels.ChannelPackage method) (fermilink.packages.curated_channels.ChannelPackageVersion method) (fermilink.packages.package_registry.PackageError method) (fermilink.packages.package_registry.PackageNotFoundError method) (fermilink.packages.package_registry.PackageValidationError method) (fermilink.runner.admission.QueueFullError method) (fermilink.runner.admission.RunAdmissionController method) (fermilink.runner.app.RunRequest method) (fermilink.runner.scientific_packages.PackageError method) (fermilink.runner.scientific_packages.PackageNotFoundError method) (fermilink.runner.scientific_packages.PackageValidationError method) (fermilink.services.ServiceSpec method) (fermilink.web.storage_helpers.LocalPublicStorageClient method)

__new__() (fermilink.packages.package_registry.PackageError class method) (fermilink.packages.package_registry.PackageNotFoundError class method) (fermilink.packages.package_registry.PackageValidationError class method) (fermilink.runner.admission.QueueFullError class method) (fermilink.runner.scientific_packages.PackageError class method) (fermilink.runner.scientific_packages.PackageNotFoundError class method) (fermilink.runner.scientific_packages.PackageValidationError class method)

A

acceptance_decision() (in module fermilink.implement.validation) acquire() (fermilink.runner.admission.RunAdmissionController method) activate_package() (in module fermilink.packages.package_registry) (in module fermilink.runner.scientific_packages) add_note() (fermilink.packages.package_registry.PackageError method) (fermilink.packages.package_registry.PackageNotFoundError method) (fermilink.packages.package_registry.PackageValidationError method) (fermilink.runner.admission.QueueFullError method) (fermilink.runner.scientific_packages.PackageError method) (fermilink.runner.scientific_packages.PackageNotFoundError method) (fermilink.runner.scientific_packages.PackageValidationError method) AgentRegistry (class in fermilink.agents) (class in fermilink.agents.registry) AgentRuntimePolicy (class in fermilink.agent_runtime) agents_path (fermilink.drvloop.instructions.DrvloopInstructionFiles attribute) (fermilink.exploop.instructions.ExploopInstructionFiles attribute) alias_paths (fermilink.drvloop.instructions.DrvloopInstructionFiles attribute) (fermilink.exploop.instructions.ExploopInstructionFiles attribute) all() (fermilink.agents.AgentRegistry method) (fermilink.agents.registry.AgentRegistry method)

append_result() (in module fermilink.implement.state) (in module fermilink.optimize.state) append_to_memory_section() (in module fermilink.drvloop.memory) (in module fermilink.exploop.memory) archive_worker_memory() (in module fermilink.implement.state) (in module fermilink.optimize.state) args (fermilink.packages.package_registry.PackageError attribute) (fermilink.packages.package_registry.PackageNotFoundError attribute) (fermilink.packages.package_registry.PackageValidationError attribute) (fermilink.runner.admission.QueueFullError attribute) (fermilink.runner.scientific_packages.PackageError attribute) (fermilink.runner.scientific_packages.PackageNotFoundError attribute) (fermilink.runner.scientific_packages.PackageValidationError attribute) as_dict() (fermilink.agent_runtime.AgentRuntimePolicy method) as_env() (fermilink.agent_runtime.AgentRuntimePolicy method) atomic_write_json() (in module fermilink.packages) (in module fermilink.packages.package_core) autogen_root() (in module fermilink.implement.state) (in module fermilink.optimize.state)

B

bin_env_key (fermilink.agents.base.ProviderAgent property) (fermilink.agents.claude_agent.ClaudeAgent property) (fermilink.agents.ClaudeAgent property) (fermilink.agents.codex_agent.CodexAgent property) (fermilink.agents.CodexAgent property) (fermilink.agents.gemini_agent.GeminiAgent property) (fermilink.agents.GeminiAgent property) (fermilink.agents.opencode_agent.OpenCodeAgent property) (fermilink.agents.OpenCodeAgent property) (fermilink.agents.ProviderAgent property) bootstrap_legacy_maxwelllink_package() (in module fermilink.runner.scientific_packages) branch_exists() (in module fermilink.optimize.git) build_benchmark_generation_agents_md() (in module fermilink.optimize.source_analysis) build_benchmark_generation_prompt() (in module fermilink.optimize.source_analysis) build_contract_generation_agents_md() (in module fermilink.implement.source_analysis) build_contract_generation_prompt() (in module fermilink.implement.source_analysis) build_controller_agents_md() (in module fermilink.implement.prompts) (in module fermilink.optimize.prompts) build_controller_prompt() (in module fermilink.implement.prompts) (in module fermilink.optimize.prompts) build_default_contract() (in module fermilink.implement.contract) build_default_registry() (in module fermilink.packages) (in module fermilink.packages.package_core)

build_drvloop_prompt() (in module fermilink.drvloop.main) build_exec_command() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method) (in module fermilink.providers) build_exploop_prompt() (in module fermilink.exploop.main) build_optimize_agents_md() (in module fermilink.optimize.prompts) build_optimize_prompt() (in module fermilink.optimize.prompts) build_run_parser() (in module fermilink.implement.main) build_source_analysis_agents_md() (in module fermilink.implement.source_analysis) (in module fermilink.optimize.source_analysis) build_source_analysis_prompt() (in module fermilink.implement.source_analysis) (in module fermilink.optimize.source_analysis) build_status_parser() (in module fermilink.implement.main) build_synced_rules() (in module fermilink.router_rules) build_worker_agents_md() (in module fermilink.implement.prompts) build_worker_prompt() (in module fermilink.implement.prompts)

C

campaign_config() (in module fermilink.implement.contract) ChannelPackage (class in fermilink.packages.curated_channels) ChannelPackageVersion (class in fermilink.packages.curated_channels) chat_id (fermilink.cli.commands.gateway.QueuedRunJob attribute) chat_key (fermilink.cli.commands.gateway.QueuedRunJob attribute) checkout_implement_branch() (in module fermilink.implement.git) checkout_optimize_branch() (in module fermilink.optimize.git) ClaudeAgent (class in fermilink.agents) (class in fermilink.agents.claude_agent) clean_package_workspace() (in module fermilink.workspace) (in module fermilink.workspace.clean) (in module fermilink.workspace.main) clean_worker_untracked() (in module fermilink.optimize.git) clean_workspace() (in module fermilink.workspace) (in module fermilink.workspace.clean) (in module fermilink.workspace.main) cleanup_paths() (in module fermilink.optimize.git) cleanup_stale_temporary_optimize_agents() (in module fermilink.optimize.git) clear_run_lock() (in module fermilink.implement.state) (in module fermilink.optimize.state) close() (fermilink.web.storage_helpers.LocalPublicStorageClient method) cmd_activate() (in module fermilink.cli.commands.packages) cmd_agent() (in module fermilink.cli.commands.agent) cmd_auto_compile() (in module fermilink.cli.commands.packages) cmd_avail() (in module fermilink.cli.commands.packages) cmd_chat() (in module fermilink.cli.commands.sessions) cmd_clean() (in module fermilink.cli.commands.workspace) (in module fermilink.workspace) (in module fermilink.workspace.clean) (in module fermilink.workspace.main) cmd_compile() (in module fermilink.cli.commands.packages) cmd_delete() (in module fermilink.cli.commands.packages) cmd_dependencies() (in module fermilink.cli.commands.packages) cmd_drvloop() (in module fermilink.drvloop.main) cmd_exec() (in module fermilink.cli.commands.sessions) cmd_exploop() (in module fermilink.exploop.main)

cmd_gateway() (in module fermilink.cli.commands.gateway) cmd_hpc() (in module fermilink.cli.commands.workspace) (in module fermilink.workspace) (in module fermilink.workspace.hpc) (in module fermilink.workspace.main) cmd_implement() (in module fermilink.cli.commands.implement) cmd_init() (in module fermilink.cli.commands.workspace) (in module fermilink.workspace) (in module fermilink.workspace.init) (in module fermilink.workspace.main) cmd_install() (in module fermilink.cli.commands.packages) cmd_list() (in module fermilink.cli.commands.packages) cmd_loop() (in module fermilink.cli.commands.sessions) cmd_optimize() (in module fermilink.cli.commands.optimize) cmd_overlay() (in module fermilink.cli.commands.packages) cmd_plan_workflow() (in module fermilink.cli.commands.workflows) cmd_recompile() (in module fermilink.cli.commands.packages) cmd_reproduce() (in module fermilink.cli.commands.workflows) cmd_research() (in module fermilink.cli.commands.workflows) cmd_restart() (in module fermilink.cli.commands.services) cmd_start() (in module fermilink.cli.commands.services) cmd_status() (in module fermilink.cli.commands.services) cmd_stop() (in module fermilink.cli.commands.services) CodexAgent (class in fermilink.agents) (class in fermilink.agents.codex_agent) collect_provider_service_env_overrides() (in module fermilink.providers) command (fermilink.services.ServiceSpec attribute) commit_paths() (in module fermilink.optimize.git) construct() (fermilink.runner.app.RunRequest class method) contract_path() (in module fermilink.implement.state) controller_config() (in module fermilink.implement.contract) controller_review_decision() (in module fermilink.implement.prompts) controller_review_final_ok() (in module fermilink.implement.validation) controller_review_summary() (in module fermilink.implement.prompts) copy() (fermilink.runner.app.RunRequest method) current_branch() (in module fermilink.optimize.git)

D

dedupe() (in module fermilink.router_rules) default_binary (fermilink.agents.base.ProviderAgent property) (fermilink.agents.claude_agent.ClaudeAgent property) (fermilink.agents.ClaudeAgent property) (fermilink.agents.codex_agent.CodexAgent property) (fermilink.agents.CodexAgent property) (fermilink.agents.gemini_agent.GeminiAgent property) (fermilink.agents.GeminiAgent property) (fermilink.agents.opencode_agent.OpenCodeAgent property) (fermilink.agents.OpenCodeAgent property) (fermilink.agents.ProviderAgent property) default_hpc_profile_path() (in module fermilink.workspace.hpc) default_program_markdown() (in module fermilink.implement.prompts) (in module fermilink.optimize.prompts)

default_program_path() (in module fermilink.optimize.state) default_service_specs() (in module fermilink.services) default_version (fermilink.packages.curated_channels.ChannelPackage attribute) delete_file() (fermilink.web.storage_helpers.LocalPublicStorageClient method) delete_package() (in module fermilink.packages.package_registry) (in module fermilink.runner.scientific_packages) description (fermilink.packages.curated_channels.ChannelPackage attribute) detect_artifact_changes() (in module fermilink.drvloop.artifacts) (in module fermilink.exploop.artifacts) dict() (fermilink.runner.app.RunRequest method) directories_match() (in module fermilink.workspace.filesystem) DrvloopConfig (class in fermilink.drvloop.main) DrvloopInstructionFiles (class in fermilink.drvloop.instructions)

E

editable_paths() (in module fermilink.implement.contract) ensure_agents_aliases() (in module fermilink.workspace.payload) ensure_agents_file() (in module fermilink.workspace.payload) ensure_autogen_root() (in module fermilink.implement.state) (in module fermilink.optimize.state) ensure_clean_repo() (in module fermilink.optimize.git) ensure_copied_directory() (in module fermilink.workspace.filesystem) ensure_default_hpc_profile() (in module fermilink.workspace.hpc) ensure_drvloop_memory() (in module fermilink.drvloop.memory) ensure_executable() (in module fermilink.implement.state) (in module fermilink.optimize.state) ensure_exploop_memory() (in module fermilink.exploop.memory) ensure_implement_root() (in module fermilink.implement.state) ensure_local_excludes() (in module fermilink.optimize.git) ensure_memory_file() (in module fermilink.implement.state) (in module fermilink.optimize.state) ensure_optimize_root() (in module fermilink.optimize.state) ensure_program_file() (in module fermilink.implement.state) (in module fermilink.optimize.state) ensure_results_file() (in module fermilink.implement.state) (in module fermilink.optimize.state) ensure_symlink() (in module fermilink.workspace.filesystem) ensure_valid_payload_root() (in module fermilink.workspace.payload) ensure_worker_worktree() (in module fermilink.implement.git) (in module fermilink.optimize.git) ensure_workspace_instruction_alias() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method) env (fermilink.services.ServiceSpec attribute)

expand_command() (in module fermilink.implement.validation) ExploopConfig (class in fermilink.exploop.main) ExploopInstructionFiles (class in fermilink.exploop.instructions) extract_analysis_summary() (in module fermilink.implement.source_analysis) (in module fermilink.optimize.source_analysis) extract_assistant_text_chunk() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method) extract_benchmark_yaml() (in module fermilink.optimize.source_analysis) extract_controller_review() (in module fermilink.implement.prompts) extract_controller_summary() (in module fermilink.implement.prompts) (in module fermilink.optimize.prompts) extract_decision() (in module fermilink.implement.prompts) (in module fermilink.optimize.prompts) extract_experiment_description() (in module fermilink.optimize.prompts) extract_implementation_contract() (in module fermilink.implement.source_analysis) extract_implementation_description() (in module fermilink.implement.prompts) extract_manifest_dependency_ids() (in module fermilink.packages) (in module fermilink.packages.package_core) extract_manifest_entry_names() (in module fermilink.packages) (in module fermilink.packages.package_core) extract_pid_numbers() (in module fermilink.exploop.prompts) extract_review_notes() (in module fermilink.implement.source_analysis) (in module fermilink.optimize.source_analysis) extract_runner_script() (in module fermilink.optimize.source_analysis) extract_source_analysis() (in module fermilink.implement.source_analysis) (in module fermilink.optimize.source_analysis) extract_validation_runner() (in module fermilink.implement.source_analysis) extract_wait_seconds() (in module fermilink.exploop.prompts)

F

fermilink module fermilink.agent_runtime module fermilink.agents module fermilink.agents.base module fermilink.agents.claude_agent module fermilink.agents.codex_agent module fermilink.agents.gemini_agent module fermilink.agents.opencode_agent module fermilink.agents.registry module fermilink.cli module fermilink.cli.commands module fermilink.cli.commands.agent module fermilink.cli.commands.gateway module fermilink.cli.commands.implement module fermilink.cli.commands.optimize module fermilink.cli.commands.packages module fermilink.cli.commands.services module fermilink.cli.commands.sessions module fermilink.cli.commands.workflows module fermilink.cli.commands.workspace module fermilink.cli.compile_helpers module fermilink.cli.compile_prompts module fermilink.cli.exec_runtime module fermilink.cli.input_repo_helpers module fermilink.cli.overlay_helpers module fermilink.cli.parser_agent module fermilink.cli.parser_builder module fermilink.cli.parser_gateway module fermilink.cli.parser_implement module fermilink.cli.parser_optimize module fermilink.cli.parser_packages module fermilink.cli.parser_services module fermilink.cli.parser_sessions module fermilink.cli.parser_workflows module fermilink.cli.parser_workspace module fermilink.cli.routing_helpers module fermilink.cli.runtime_loaders module fermilink.cli.shared_helpers module fermilink.cli.workflow_prompts module fermilink.cli.zero_arg module fermilink.config module fermilink.drvloop module fermilink.drvloop.artifacts module fermilink.drvloop.instructions module fermilink.drvloop.main module fermilink.drvloop.memory module fermilink.drvloop.prompts module fermilink.exploop module fermilink.exploop.artifacts module fermilink.exploop.instructions module fermilink.exploop.main module fermilink.exploop.memory module fermilink.exploop.pid module fermilink.exploop.prompts module fermilink.implement module fermilink.implement.campaign module

fermilink.implement.contract module fermilink.implement.git module fermilink.implement.goal module fermilink.implement.main module fermilink.implement.prompts module fermilink.implement.source_analysis module fermilink.implement.state module fermilink.implement.validation module fermilink.optimize module fermilink.optimize.benchmark module fermilink.optimize.campaign module fermilink.optimize.git module fermilink.optimize.goal module fermilink.optimize.goal_pipeline module fermilink.optimize.main module fermilink.optimize.prompts module fermilink.optimize.source_analysis module fermilink.optimize.state module fermilink.packages module fermilink.packages.curated_channels module fermilink.packages.package_core module fermilink.packages.package_registry module fermilink.providers module fermilink.router_rules module fermilink.runner module fermilink.runner.admission module fermilink.runner.app module fermilink.runner.scientific_packages module fermilink.services module fermilink.web module fermilink.web.activity_helpers module fermilink.web.artifact_helpers module fermilink.web.auth_helpers module fermilink.web.chat_helpers module fermilink.web.package_router_helpers module fermilink.web.package_session_helpers module fermilink.web.runner_helpers module fermilink.web.sqlite_helpers module fermilink.web.status_helpers module fermilink.web.storage_helpers module fermilink.workspace module fermilink.workspace.clean module fermilink.workspace.common module fermilink.workspace.filesystem module fermilink.workspace.hpc module fermilink.workspace.init module fermilink.workspace.main module fermilink.workspace.payload module fermilink_clean_main() (in module fermilink.cli.commands.workspace) (in module fermilink.workspace) (in module fermilink.workspace.clean) (in module fermilink.workspace.main) fermilink_init_main() (in module fermilink.cli.commands.workspace) (in module fermilink.workspace) (in module fermilink.workspace.init) (in module fermilink.workspace.main) file_id (fermilink.cli.commands.gateway.TelegramInboundFile attribute) files_match() (in module fermilink.workspace.filesystem) final_integrity_ok() (in module fermilink.implement.validation) find_project_root() (in module fermilink.runner.app) (in module fermilink.runner.scientific_packages) from_orm() (fermilink.runner.app.RunRequest class method)

G

GatewayLoopConfig (class in fermilink.cli.commands.gateway) GeminiAgent (class in fermilink.agents) (class in fermilink.agents.gemini_agent) get() (fermilink.agents.AgentRegistry method) (fermilink.agents.registry.AgentRegistry method) get_default_agent_registry() (in module fermilink.agents) (in module fermilink.agents.registry) get_provider_agent() (in module fermilink.agents) (in module fermilink.agents.registry) get_read_url() (fermilink.web.storage_helpers.LocalPublicStorageClient method) goal_analysis_path() (in module fermilink.implement.state) (in module fermilink.optimize.state)

goal_benchmark_path() (in module fermilink.optimize.state) goal_copy_path() (in module fermilink.implement.state) (in module fermilink.optimize.state) goal_inputs_all_root() (in module fermilink.optimize.state) goal_inputs_manifest_path() (in module fermilink.optimize.state) goal_inputs_worker_root() (in module fermilink.optimize.state) goal_manifest_path() (in module fermilink.optimize.state) goal_run_script_path() (in module fermilink.optimize.state) goal_runner_path() (in module fermilink.optimize.state) goal_setup_path() (in module fermilink.optimize.state) goal_submit_launcher_path() (in module fermilink.optimize.state)

H

head_sha() (in module fermilink.optimize.git)

homepage_url (fermilink.packages.curated_channels.ChannelPackage attribute) hpc_profile (fermilink.cli.commands.gateway.GatewayLoopConfig attribute)

I

immutable_paths() (in module fermilink.implement.contract) implement_root() (in module fermilink.implement.state) infer_rule() (in module fermilink.router_rules) infer_workload_split() (in module fermilink.implement.contract) init_git (fermilink.cli.commands.gateway.GatewayLoopConfig attribute) initialize_package_workspace() (in module fermilink.workspace) (in module fermilink.workspace.init) (in module fermilink.workspace.main) initialize_workspace() (in module fermilink.workspace) (in module fermilink.workspace.init) (in module fermilink.workspace.main) inputs_root() (in module fermilink.optimize.state) insert_option_before_prompt() (in module fermilink.agents.base)

inspect_worker_git_metadata() (in module fermilink.optimize.git) install_from_git_url() (in module fermilink.packages.package_registry) install_from_local_path() (in module fermilink.packages.package_registry) install_from_zip() (in module fermilink.packages.package_registry) is_exportable_entry_name() (in module fermilink.packages) (in module fermilink.packages.package_core) is_goal_markdown() (in module fermilink.implement.goal) (in module fermilink.optimize.goal) is_pid_alive() (in module fermilink.exploop.pid) is_valid_payload_root() (in module fermilink.workspace.payload) iter_package_entries() (in module fermilink.packages.package_registry) (in module fermilink.runner.scientific_packages) iter_payload_entries() (in module fermilink.workspace.payload)

J

job_id (fermilink.cli.commands.gateway.QueuedRunJob attribute)

json() (fermilink.runner.app.RunRequest method)

L

legacy_hpc_profile_path() (in module fermilink.workspace.hpc) legacy_state_path_for() (in module fermilink.drvloop.artifacts) (in module fermilink.exploop.artifacts) link_or_copy_entry() (in module fermilink.packages) (in module fermilink.packages.package_core) list_changed_paths() (in module fermilink.optimize.git) list_curated_packages() (in module fermilink.packages.curated_channels) list_packages() (in module fermilink.packages.package_registry) (in module fermilink.runner.scientific_packages) list_untracked_paths() (in module fermilink.optimize.git) load_agent_runtime_policy() (in module fermilink.agent_runtime) load_contract() (in module fermilink.implement.contract) load_drvloop_guide() (in module fermilink.drvloop.prompts) load_exploop_guide() (in module fermilink.exploop.prompts) load_family_hints() (in module fermilink.router_rules) load_hpc_profile_payload() (in module fermilink.workspace.hpc)

load_json_file() (in module fermilink.implement.state) (in module fermilink.optimize.state) load_registry() (in module fermilink.packages.package_registry) (in module fermilink.runner.scientific_packages) load_registry_file() (in module fermilink.packages) (in module fermilink.packages.package_core) load_run_lock() (in module fermilink.optimize.state) load_runner_app_module() (in module fermilink.workspace.common) load_runner_scipkg_module() (in module fermilink.workspace.common) load_state() (in module fermilink.drvloop.artifacts) (in module fermilink.exploop.artifacts) (in module fermilink.implement.state) (in module fermilink.optimize.state) load_workspace_manifest() (in module fermilink.packages.package_registry) (in module fermilink.runner.scientific_packages) LocalPublicStorageClient (class in fermilink.web.storage_helpers) loop_iteration_hook (fermilink.cli.commands.gateway.GatewayLoopConfig attribute)

M

main() (in module fermilink.cli) (in module fermilink.drvloop.main) (in module fermilink.exploop.main) (in module fermilink.implement.main) managed_agents_symlink_sources() (in module fermilink.workspace.payload) materialize_drvloop_instructions() (in module fermilink.drvloop.instructions) materialize_exploop_instructions() (in module fermilink.exploop.instructions) max_iterations (fermilink.cli.commands.gateway.GatewayLoopConfig attribute) (fermilink.cli.commands.gateway.QueuedRunJob attribute) (fermilink.drvloop.main.DrvloopConfig attribute) (fermilink.exploop.main.ExploopConfig attribute) max_wait_seconds (fermilink.cli.commands.gateway.GatewayLoopConfig attribute) (fermilink.cli.commands.gateway.QueuedRunJob attribute) (fermilink.exploop.main.ExploopConfig attribute) memory_path() (in module fermilink.implement.state) (in module fermilink.optimize.state) memory_path_for() (in module fermilink.drvloop.memory) (in module fermilink.exploop.memory) mode (fermilink.cli.commands.gateway.QueuedRunJob attribute) model (fermilink.agent_runtime.AgentRuntimePolicy attribute) model_computed_fields (fermilink.runner.app.RunRequest attribute) model_config (fermilink.runner.app.RunRequest attribute) model_construct() (fermilink.runner.app.RunRequest class method) model_copy() (fermilink.runner.app.RunRequest method) model_dump() (fermilink.runner.app.RunRequest method) model_dump_json() (fermilink.runner.app.RunRequest method) model_extra (fermilink.runner.app.RunRequest property) model_fields (fermilink.runner.app.RunRequest attribute) model_fields_set (fermilink.runner.app.RunRequest property) model_parametrized_name() (fermilink.runner.app.RunRequest class method) model_post_init() (fermilink.runner.app.RunRequest method) model_rebuild() (fermilink.runner.app.RunRequest class method) model_validate() (fermilink.runner.app.RunRequest class method) model_validate_json() (fermilink.runner.app.RunRequest class method) model_validate_strings() (fermilink.runner.app.RunRequest class method) module fermilink fermilink.agent_runtime fermilink.agents fermilink.agents.base fermilink.agents.claude_agent fermilink.agents.codex_agent fermilink.agents.gemini_agent fermilink.agents.opencode_agent fermilink.agents.registry fermilink.cli fermilink.cli.commands fermilink.cli.commands.agent fermilink.cli.commands.gateway fermilink.cli.commands.implement fermilink.cli.commands.optimize fermilink.cli.commands.packages fermilink.cli.commands.services fermilink.cli.commands.sessions fermilink.cli.commands.workflows fermilink.cli.commands.workspace fermilink.cli.compile_helpers fermilink.cli.compile_prompts fermilink.cli.exec_runtime fermilink.cli.input_repo_helpers fermilink.cli.overlay_helpers fermilink.cli.parser_agent fermilink.cli.parser_builder fermilink.cli.parser_gateway fermilink.cli.parser_implement fermilink.cli.parser_optimize fermilink.cli.parser_packages fermilink.cli.parser_services fermilink.cli.parser_sessions fermilink.cli.parser_workflows fermilink.cli.parser_workspace fermilink.cli.routing_helpers fermilink.cli.runtime_loaders fermilink.cli.shared_helpers fermilink.cli.workflow_prompts fermilink.cli.zero_arg fermilink.config fermilink.drvloop fermilink.drvloop.artifacts fermilink.drvloop.instructions fermilink.drvloop.main fermilink.drvloop.memory fermilink.drvloop.prompts fermilink.exploop fermilink.exploop.artifacts fermilink.exploop.instructions fermilink.exploop.main fermilink.exploop.memory fermilink.exploop.pid fermilink.exploop.prompts fermilink.implement fermilink.implement.campaign fermilink.implement.contract fermilink.implement.git fermilink.implement.goal fermilink.implement.main fermilink.implement.prompts fermilink.implement.source_analysis fermilink.implement.state fermilink.implement.validation fermilink.optimize fermilink.optimize.benchmark fermilink.optimize.campaign fermilink.optimize.git fermilink.optimize.goal fermilink.optimize.goal_pipeline fermilink.optimize.main fermilink.optimize.prompts fermilink.optimize.source_analysis fermilink.optimize.state fermilink.packages fermilink.packages.curated_channels fermilink.packages.package_core fermilink.packages.package_registry fermilink.providers fermilink.router_rules fermilink.runner fermilink.runner.admission fermilink.runner.app fermilink.runner.scientific_packages fermilink.services fermilink.web fermilink.web.activity_helpers fermilink.web.artifact_helpers fermilink.web.auth_helpers fermilink.web.chat_helpers fermilink.web.package_router_helpers fermilink.web.package_session_helpers fermilink.web.runner_helpers fermilink.web.sqlite_helpers fermilink.web.status_helpers fermilink.web.storage_helpers fermilink.workspace fermilink.workspace.clean fermilink.workspace.common fermilink.workspace.filesystem fermilink.workspace.hpc fermilink.workspace.init fermilink.workspace.main fermilink.workspace.payload

N

name (fermilink.services.ServiceSpec attribute) normalize_channel_id() (in module fermilink.packages.curated_channels) normalize_command_list() (in module fermilink.implement.contract) normalize_components() (in module fermilink.services) normalize_hpc_profile_payload() (in module fermilink.workspace.hpc) normalize_model() (in module fermilink.agent_runtime) normalize_package_id() (in module fermilink.packages) (in module fermilink.packages.package_core) (in module fermilink.packages.package_registry) (in module fermilink.runner.scientific_packages) normalize_package_workflow_type() (in module fermilink.packages.package_registry) normalize_process_home() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method)

normalize_provider() (in module fermilink.agent_runtime) normalize_reasoning_effort() (in module fermilink.agent_runtime) normalize_registry_payload() (in module fermilink.packages) (in module fermilink.packages.package_core) normalize_sandbox_mode() (in module fermilink.agent_runtime) normalize_sandbox_policy() (in module fermilink.agent_runtime) normalize_terms() (in module fermilink.router_rules) notes (fermilink.packages.curated_channels.ChannelPackageVersion attribute)

O

OpenCodeAgent (class in fermilink.agents) (class in fermilink.agents.opencode_agent) ops_admission() (in module fermilink.runner.app) ops_concurrency() (in module fermilink.runner.app) ops_concurrency_prometheus() (in module fermilink.runner.app)

optimize_root() (in module fermilink.optimize.state) overlay_package_into_repo() (in module fermilink.packages.package_registry) (in module fermilink.runner.scientific_packages) overlay_package_into_repo_core() (in module fermilink.packages) (in module fermilink.packages.package_core)

P

package_id (fermilink.cli.commands.gateway.GatewayLoopConfig attribute) (fermilink.packages.curated_channels.ChannelPackage attribute) (fermilink.runner.app.RunRequest attribute) package_id_terms() (in module fermilink.router_rules) PackageError, [1] PackageNotFoundError, [1] packages_root() (in module fermilink.packages.package_registry) (in module fermilink.runner.scientific_packages) PackageValidationError, [1] parse_file() (fermilink.runner.app.RunRequest class method) parse_goal() (in module fermilink.implement.goal) (in module fermilink.optimize.goal) parse_obj() (fermilink.runner.app.RunRequest class method) parse_raw() (fermilink.runner.app.RunRequest class method) path_exists() (in module fermilink.workspace.filesystem) pid_is_running() (in module fermilink.implement.state) (in module fermilink.optimize.state) pid_stall_seconds (fermilink.cli.commands.gateway.GatewayLoopConfig attribute) plan_path() (in module fermilink.implement.state) pre_commands() (in module fermilink.implement.contract) prepare_final_reply_capture_command() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method) prepare_one_shot_exec_command() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method) prepare_runtime_env() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method)

prepare_shared_turn_command() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method) program_path() (in module fermilink.implement.state) prompt (fermilink.cli.commands.gateway.QueuedRunJob attribute) prompt_file (fermilink.drvloop.main.DrvloopConfig attribute) (fermilink.exploop.main.ExploopConfig attribute) provider (fermilink.agent_runtime.AgentRuntimePolicy attribute) (fermilink.agents.base.ProviderAgent property) (fermilink.agents.claude_agent.ClaudeAgent property) (fermilink.agents.ClaudeAgent property) (fermilink.agents.codex_agent.CodexAgent property) (fermilink.agents.CodexAgent property) (fermilink.agents.gemini_agent.GeminiAgent property) (fermilink.agents.GeminiAgent property) (fermilink.agents.opencode_agent.OpenCodeAgent property) (fermilink.agents.OpenCodeAgent property) (fermilink.agents.ProviderAgent property) (fermilink.runner.app.RunRequest attribute) provider_bin_default_map() (fermilink.agents.AgentRegistry method) (fermilink.agents.registry.AgentRegistry method) provider_bin_env_key() (in module fermilink.providers) provider_bin_env_map() (fermilink.agents.AgentRegistry method) (fermilink.agents.registry.AgentRegistry method) provider_id() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method) provider_supports_auto_compile_metadata_generation() (in module fermilink.providers) ProviderAgent (class in fermilink.agents) (class in fermilink.agents.base)

Q

queued_at_utc (fermilink.cli.commands.gateway.QueuedRunJob attribute) QueuedRunJob (class in fermilink.cli.commands.gateway) QueueFullError quick_benchmark_path() (in module fermilink.optimize.state)

quick_manifest_path() (in module fermilink.optimize.state) quick_run_script_path() (in module fermilink.optimize.state) quick_runner_path() (in module fermilink.optimize.state) quick_setup_path() (in module fermilink.optimize.state) quick_submit_launcher_path() (in module fermilink.optimize.state)

R

read_campaign_status() (in module fermilink.implement) (in module fermilink.implement.campaign) (in module fermilink.optimize.campaign) (in module fermilink.optimize.main) reasoning_effort (fermilink.agent_runtime.AgentRuntimePolicy attribute) REASONING_MAP (fermilink.agents.claude_agent.ClaudeAgent attribute) (fermilink.agents.ClaudeAgent attribute) recent_results_text() (in module fermilink.implement.state) (in module fermilink.optimize.state) record_artifact_changes() (in module fermilink.drvloop.artifacts) (in module fermilink.exploop.artifacts) record_campaign_event() (in module fermilink.optimize.state) register_agent_parser() (in module fermilink.cli.parser_agent) register_chat_parser() (in module fermilink.cli.parser_sessions) register_drvloop_parser() (in module fermilink.cli.parser_sessions) register_exec_loop_parsers() (in module fermilink.cli.parser_sessions) register_exploop_parser() (in module fermilink.cli.parser_sessions) register_gateway_parser() (in module fermilink.cli.parser_gateway) register_implement_parser() (in module fermilink.cli.parser_implement) register_optimize_parser() (in module fermilink.cli.parser_optimize) register_package() (in module fermilink.packages.package_registry) (in module fermilink.runner.scientific_packages) register_package_install_compile_parsers() (in module fermilink.cli.parser_packages) register_package_management_parsers() (in module fermilink.cli.parser_packages) register_service_parsers() (in module fermilink.cli.parser_services) register_workflow_parsers() (in module fermilink.cli.parser_workflows) register_workspace_parsers() (in module fermilink.cli.parser_workspace) registry_path() (in module fermilink.packages.package_registry) (in module fermilink.runner.scientific_packages) release() (fermilink.runner.admission.RunAdmissionController method) remove_agents_aliases() (in module fermilink.workspace.payload) remove_existing_entry() (in module fermilink.packages) (in module fermilink.packages.package_core) remove_managed_agents_file() (in module fermilink.workspace.payload) remove_managed_copied_directory() (in module fermilink.workspace.filesystem) remove_managed_dependency_links() (in module fermilink.packages) (in module fermilink.packages.package_core) remove_managed_entries() (in module fermilink.packages) (in module fermilink.packages.package_core) remove_managed_symlink() (in module fermilink.workspace.filesystem) remove_path() (in module fermilink.workspace.filesystem) remove_workspace_instruction_alias_symlink() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method) render_stream_event() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method) render_worker_visible_goal() (in module fermilink.implement.goal) repo_dir (fermilink.drvloop.main.DrvloopConfig attribute) (fermilink.exploop.main.ExploopConfig attribute) repo_root_fallback() (in module fermilink.workspace.payload)

reset_to_commit() (in module fermilink.optimize.git) reset_worker_memory_file() (in module fermilink.implement.state) (in module fermilink.optimize.state) reset_worker_to_commit() (in module fermilink.optimize.git) resolve_agent_runtime_path() (in module fermilink.agent_runtime) resolve_agent_runtime_policy() (in module fermilink.agent_runtime) resolve_binary() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method) resolve_binary_override() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method) resolve_cli_path() (in module fermilink.workspace.common) resolve_curated_package() (in module fermilink.packages.curated_channels) resolve_exploop_agents_source() (in module fermilink.workspace.common) resolve_fermilink_home() (in module fermilink.config) resolve_payload_agents_source() (in module fermilink.workspace.payload) resolve_payload_root() (in module fermilink.workspace.payload) resolve_provider_binary() (in module fermilink.providers) resolve_provider_binary_override() (in module fermilink.providers) resolve_runtime_root() (in module fermilink.config) resolve_scipkg_root() (in module fermilink.config) (in module fermilink.runner.scientific_packages) resolve_session_package() (in module fermilink.packages.package_registry) (in module fermilink.runner.scientific_packages) resolve_software_agents_source() (in module fermilink.workspace.common) resolve_workspaces_root() (in module fermilink.config) restore_worker_git_metadata() (in module fermilink.optimize.git) results_path() (in module fermilink.implement.state) (in module fermilink.optimize.state) run() (in module fermilink.runner.app) run_campaign() (in module fermilink.optimize.campaign) (in module fermilink.optimize.main) run_drvloop() (in module fermilink.drvloop.main) run_exploop() (in module fermilink.exploop.main) run_generation (fermilink.cli.commands.gateway.QueuedRunJob attribute) run_git() (in module fermilink.optimize.git) run_goal_campaign() (in module fermilink.implement) (in module fermilink.implement.campaign) (in module fermilink.optimize.campaign) (in module fermilink.optimize.main) run_lock_path() (in module fermilink.implement.state) (in module fermilink.optimize.state) run_pre_commands() (in module fermilink.implement.validation) run_quick_campaign() (in module fermilink.optimize.campaign) (in module fermilink.optimize.main) run_validation_suite() (in module fermilink.implement.validation) RunAdmissionController (class in fermilink.runner.admission) RunRequest (class in fermilink.runner.app) runs_root() (in module fermilink.implement.state) (in module fermilink.optimize.state)

S

safe_relative() (in module fermilink.implement.state) (in module fermilink.optimize.state) sandbox (fermilink.cli.commands.gateway.GatewayLoopConfig attribute) (fermilink.drvloop.main.DrvloopConfig attribute) (fermilink.exploop.main.ExploopConfig attribute) (fermilink.runner.app.RunRequest attribute) sandbox_mode (fermilink.agent_runtime.AgentRuntimePolicy attribute) SANDBOX_PERMISSION_MODE (fermilink.agents.claude_agent.ClaudeAgent attribute) (fermilink.agents.ClaudeAgent attribute) sandbox_policy (fermilink.agent_runtime.AgentRuntimePolicy attribute) sanitize_process_env() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method) save_agent_runtime_policy() (in module fermilink.agent_runtime) save_registry() (in module fermilink.packages.package_registry) save_registry_file() (in module fermilink.packages) (in module fermilink.packages.package_core) save_state() (in module fermilink.drvloop.artifacts) (in module fermilink.exploop.artifacts) save_workspace_manifest() (in module fermilink.packages.package_registry) (in module fermilink.runner.scientific_packages) schema() (fermilink.runner.app.RunRequest class method) schema_json() (fermilink.runner.app.RunRequest class method) scoring_config() (in module fermilink.implement.contract) select_package_version() (in module fermilink.packages.curated_channels) service_env_overrides() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method) service_status() (in module fermilink.services)

ServiceSpec (class in fermilink.services) session_id (fermilink.runner.app.RunRequest attribute) set_hpc_profile() (in module fermilink.workspace.hpc) set_package_dependency_ids() (in module fermilink.packages.package_registry) (in module fermilink.runner.scientific_packages) set_package_overlay_entries() (in module fermilink.packages.package_registry) (in module fermilink.runner.scientific_packages) snapshot() (fermilink.runner.admission.RunAdmissionController method) snapshot_for_user() (fermilink.runner.admission.RunAdmissionController method) snapshot_project_artifacts() (in module fermilink.drvloop.artifacts) (in module fermilink.exploop.artifacts) source_archive_url (fermilink.packages.curated_channels.ChannelPackageVersion attribute) source_ref_type (fermilink.packages.curated_channels.ChannelPackageVersion attribute) source_ref_value (fermilink.packages.curated_channels.ChannelPackageVersion attribute) sse() (in module fermilink.runner.app) start_service() (in module fermilink.services) state_path() (in module fermilink.implement.state) (in module fermilink.optimize.state) state_path_for() (in module fermilink.drvloop.artifacts) (in module fermilink.exploop.artifacts) stop_service() (in module fermilink.services) suggested_name (fermilink.cli.commands.gateway.TelegramInboundFile attribute) supports_auto_compile_metadata_generation() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method) supports_direct_terminal_stream() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method) symlink_matches() (in module fermilink.workspace.filesystem) sync_router_rules() (in module fermilink.router_rules)

T

tags (fermilink.packages.curated_channels.ChannelPackage attribute) TelegramInboundFile (class in fermilink.cli.commands.gateway)

temporary_optimize_agents() (in module fermilink.optimize.git) title (fermilink.packages.curated_channels.ChannelPackage attribute)

U

update_forward_refs() (fermilink.runner.app.RunRequest class method) upload_file() (fermilink.web.storage_helpers.LocalPublicStorageClient method) upstream_repo_url (fermilink.packages.curated_channels.ChannelPackage attribute) user_id (fermilink.runner.app.RunRequest attribute) user_prompt (fermilink.drvloop.main.DrvloopConfig attribute) (fermilink.exploop.main.ExploopConfig attribute) (fermilink.runner.app.RunRequest attribute) uses_json_output_for_second_guess() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method)

uses_json_stream() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method) utc_now_z() (in module fermilink.implement.state) (in module fermilink.optimize.state)

V

validate() (fermilink.runner.app.RunRequest class method) validate_contract() (in module fermilink.implement.contract) validation_commands() (in module fermilink.implement.contract) validation_complete() (in module fermilink.implement.validation) validation_runner_path() (in module fermilink.implement.state)

validation_score() (in module fermilink.implement.validation) verified (fermilink.packages.curated_channels.ChannelPackageVersion attribute) verify_provider_bin() (in module fermilink.runner.app) version_id (fermilink.packages.curated_channels.ChannelPackageVersion attribute) versions (fermilink.packages.curated_channels.ChannelPackage attribute)

W

wait_seconds (fermilink.cli.commands.gateway.GatewayLoopConfig attribute) (fermilink.exploop.main.ExploopConfig attribute) with_traceback() (fermilink.packages.package_registry.PackageError method) (fermilink.packages.package_registry.PackageNotFoundError method) (fermilink.packages.package_registry.PackageValidationError method) (fermilink.runner.admission.QueueFullError method) (fermilink.runner.scientific_packages.PackageError method) (fermilink.runner.scientific_packages.PackageNotFoundError method) (fermilink.runner.scientific_packages.PackageValidationError method) with_worker_git_disabled() (in module fermilink.optimize.git) worker_benchmark_path() (in module fermilink.optimize.state) worker_branch_name() (in module fermilink.implement.git) (in module fermilink.optimize.git) worker_config() (in module fermilink.implement.contract) worker_memory_path() (in module fermilink.implement.state) (in module fermilink.optimize.state) worker_storage_root() (in module fermilink.implement.git) worker_visible_contract() (in module fermilink.implement.contract) worker_worktree_path() (in module fermilink.implement.git) (in module fermilink.optimize.git) workflow_status_hook (fermilink.cli.commands.gateway.GatewayLoopConfig attribute)

workload_split() (in module fermilink.implement.contract) workspace_id (fermilink.cli.commands.gateway.QueuedRunJob attribute) workspace_instruction_alias_name() (fermilink.agents.base.ProviderAgent method) (fermilink.agents.claude_agent.ClaudeAgent method) (fermilink.agents.ClaudeAgent method) (fermilink.agents.codex_agent.CodexAgent method) (fermilink.agents.CodexAgent method) (fermilink.agents.gemini_agent.GeminiAgent method) (fermilink.agents.GeminiAgent method) (fermilink.agents.opencode_agent.OpenCodeAgent method) (fermilink.agents.OpenCodeAgent method) (fermilink.agents.ProviderAgent method) workspace_label (fermilink.cli.commands.gateway.QueuedRunJob attribute) workspace_manifest_path() (in module fermilink.packages.package_registry) (in module fermilink.runner.scientific_packages) write_contract() (in module fermilink.implement.contract) write_json_file() (in module fermilink.implement.state) (in module fermilink.optimize.state) write_run_lock() (in module fermilink.optimize.state) write_state() (in module fermilink.implement.state) (in module fermilink.optimize.state)

Z

zip_url (fermilink.packages.curated_channels.ChannelPackage attribute)